Publications

2019

• Hemzal, D; Kang, YR; Dvorak, J; Kabzinski, T; Kubicek, K; Kim, YD; Humlicek, J, 2019: Treatment of Surface Plasmon Resonance (SPR) Background in Total Internal Reflection Ellipsometry: Characterization of RNA Polymerase II Film Formation. APPLIED SPECTROSCOPY 73(3), p. 261 - 270, doi: 10.1177/0003702819826280
• Bertolla, L; Dlouhy, I; Bartonickova, E; Tousek, J; Novacek, J; Macova, P, 2019: Deconstruction of microfibrillated cellulose into nanocrystalline cellulose rods and mesogenic phase formation in concentrated low-modulus sodium silicate solutions. CELLULOSE 26(7), p. 4325 - 4344, doi: 10.1007/s10570-019-02364-6
• Brazda, P; Sedo, O; Kubicek, K; Stefl, R, 2019: Efficient and robust preparation of tyrosine phosphorylated intrinsically disordered proteins. BIOTECHNIQUES 67(1), p. 16 - 22, doi: 10.2144/btn-2019-0033
• Axmann, M; Sezgin, E; Karner, A; Novacek, J; Brodesser, MD; Rohrl, C; Preiner, J; Stangl, H; Plochberger, B, 2019: Receptor-Independent Transfer of Low Density Lipoprotein Cargo to Biomembranes. NANO LETTERS 19(4), p. 2562 - 2567, doi: 10.1021/acs.nanolett.9b00319
• Kasari, V; Pochopien, AA; Margus, T; Murina, V; Turnbull, K; Zhou, Y; Nissan, T; Graf, M; Novacek, J; Atkinson, GC; Johansson, MJO; Wilson, DN; Hauryliuk, V, 2019: A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling. NUCLEIC ACIDS RESEARCH 47(16), p. 8807 - 8820, doi: 10.1093/nar/gkz600
• Yadav, DK; Zigáčková, D; Zlobina, M; Klumpler, T; Beaumont, C; Kubíčková, M; Vaňáčová, Š; Lukavsky, PJ , 2019: Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition. NUCLEIC ACIDS RESEARCH , doi: 10.1093/nar/gkz1163
• Nagy, B; Ambrus, A; Zambo, Z; Hubert, A; Polak, M; Szabo, E; Novacek, J; Jordan, F; Adam-Vizi, V, 2019: CRYO-EM STRUCTURE OF THE DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE (E2) COMPONENT OF THE HUMAN ALPHA-KETOGLUTARATE DEHYDROGENASE COMPLEX. PROTEIN SCIENCE 28, p. 155 - 155
• Yadav, DK; Zigackova, D; Zlobina, M; Klumpler, T; Beaumont, C; Kubickova, M; Vanacova, S; Lukavsky, PJ, 2019: Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition. FEBS OPEN BIO 9, p. 29 - 29
• Kezar, A; Kavcic, L; Polak, M; Novacek, J; Gutierrez-Aguirre, I; Znidaric, MT; Co, A; Stare, K; Gruden, K; Ravnikar, M; Pahovnik, D; Zagar, E; Merzel, F; Anderluh, G; Podobnik, M, 2019: Structural basis for the multitasking nature of the potato virus Y coat protein. SCIENCE ADVANCES 5(7), doi: 10.1126/sciadv.aaw3808
• Trcka, F; Durech, M; Vankova, P; Chmelik, J; Martinkova, V; Hausner, J; Kadek, A; Marcoux, J; Klumpler, T; Vojtesek, B; Muller, P; Man, P, 2019: Human Stress-inducible Hsp70 Has a High Propensity to Form ATP-dependent Antiparallel Dimers That Are Differentially Regulated by Cochaperone Binding. MOLECULAR & CELLULAR PROTEOMICS 18(2), p. 320 - 337, doi: 10.1074/mcp.RA118.001044
• Seitz, K; Buczolich, K; Dikunova, A; Plevka, P; Power, K; Riimenapf, T; Lamp, B, 2019: A molecular clone of Chronic Bee Paralysis Virus (CBPV) causes mortality in honey bee pupae (Apis mellifera). SCIENTIFIC REPORTS 9, doi: 10.1038/s41598-019-52822-1

2018

• Evangelidis, T; Nerli, S; Novacek, J; Brereton, AE; Karplus, PA; Dotas, RR; Venditti, V; Sgourakis, NG; Tripsianes, K, 2018: Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra. NATURE COMMUNICATIONS 9, doi: 10.1038/s41467-017-02592-z
• Jandova, Z; Trosanova, Z; Weisova, V; Oostenbrink, C; Hritz, J, 2018: Free energy calculations on the stability of the 14-3-3 zeta protein. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 1866(3), p. 442 - 450, doi: 10.1016/j.bbapap.2017.11.012
• Spirek, M; Mlcouskova, J; Belan, O; Gyimesi, M; Harami, G.M; Molnar, E; Novacek, J; Kovacs, M; Krejci, L, 2018: Human RAD51 rapidly forms intrinsically dynamic nucleoprotein filaments modulated by nucleotide binding state. NUCLEIC ACIDS RESEARCH
• Galaz, Z; Mekyska, J; Kiska, T; Zvoncak, V; Mucha, J; Harar, P; Smekal, Z; Eliasova, I; Mrackova, M; Kostalova, M; Rektorova, I; Faundez-Zanuy, M; Alonso-Hernandez, JB; Gomez-Vilda, P, 2018: Monitoring Progress of Parkinson´s Disease Based on Changes in Phonation: a Pilot Study. 2018 41ST INTERNATIONAL CONFERENCE ON TELECOMMUNICATIONS AND SIGNAL PROCESSING (TSP) , p. 218 - 221
• Galaz, Z; Mekyska, J; Zvoncak, V; Mucha, J; Kiska, T; Smekal, Z; Eliasova, I; Mrackova, M; Kostalova, M; Rektorova, I; Faundez-Zanuy, M; Alonso-Hernandez, JB; Gomez-Vilda, P, 2018: Changes in Phonation and Their Relations with Progress of Parkinson´s Disease. APPLIED SCIENCES-BASEL 8(12), doi: 10.3390/app8122339
• Clark, S; Myers, JB; King, A; Fiala, R; Novacek, J; Pearce, G; Heierhorst, J; Reichow, SL; Barbar, EJ, 2018: Multivalency regulates activity in an intrinsically disordered transcription factor. ELIFE 7, doi: 10.7554/eLife.36258
• Sicorello, A; Kelly, G; Oregioni, A; Novacek, J; Sklenar, V; Pastore, A, 2018: The Structural Properties in Solution of the Intrinsically Mixed Folded Protein Ataxin-3. BIOPHYSICAL JOURNAL 115(1), p. 59 - 71, doi: 10.1016/j.bpj.2018.05.029
• Melkova, K; Zapletal, V; Jansen, S; Nomilner, E; Zachrdla, M; Hritz, J; Novacek, J; Zweckstetter, M; Jensen, MR; Blackledge, M; Zidek, L, 2018: Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics. JOURNAL OF BIOLOGICAL CHEMISTRY 293(34), p. 13297 - 13309, doi: 10.1074/jbc.RA118.001769
• Plochberger, B; Roehrl, C; Preiner, J; Karner, A; Axmann, M; Novacek, J; Sezgin, E; Eggeling, C; Hinterndorfer, P; Schuetz, GJ; Stangl, H, 2018: INTERACTION OF LIPOPROTEIN PARTICLES WITH LIPID BILAYER-MEMBRANES. ATHEROSCLEROSIS 275, p. E23 - E23, doi: 10.1016/j.atherosclerosis.2018.06.054
• Crowe-McAuliffe, C; Graf, M; Huter, P; Takada, H; Abdelshahid, M; Novacek, J; Murina, V; Atkinson, GC; Hauryliuk, V; Wilson, DN, 2018: Structural basis for antibiotic resistance mediated by the Bacillus subtilis ABCF ATPase VmlR. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(36), p. 8978 - 8983, doi: 10.1073/pnas.1808535115

2017

• Jasnovidova, O; Krejcikova, M; Kubicek, K; Stefl, R, 2017: Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p. EMBO REPORTS 18(6), p. 906 - 913, doi: 10.15252/embr.201643723
• Ruzicka, M; Kulhanek, P; Radova, L; Cechova, A; Spackova, N; Fajkusova, L; Reblova, K, 2017: DNA mutation motifs in the genes associated with inherited diseases. PLOS ONE 12(8), doi: 10.1371/journal.pone.0182377
• Skubnik, K; Novacek, J; Fuzik, T; Pridal, A; Paxton, RJ; Plevka, P, 2017: Structure of deformed wing virus, a major honey bee pathogen. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 114(12), p. 3210 - 3215, doi: 10.1073/pnas.1615695114
• Otrusinova, O; Demo, G; Padrta, P; Jasenakova, Z; Pekarova, B; Gelova, Z; Szmitkowska, A; Kaderavek, P; Jansen, S; Zachrdla, M; Klumpler, T; Marek, J; Hritz, J; Janda, L; Iwai, H; Wimmerova, M; Hejatko, J; Zidek, L, 2017: Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana. JOURNAL OF BIOLOGICAL CHEMISTRY 292(42), p. 17525 - 17540, doi: 10.1074/jbc.M117.790212
• Huter, P; Arenz, S; Bock, LV; Graf, M; Frister, JO; Heuer, A; Peil, L; Starosta, AL; Wohlgemuth, I; Peske, F; Novacek, J; Berninghausen, O; Grubmuller, H; Tenson, T; Beckmann, R; Rodnina, MV; Vaiana, AC; Wilson, DN, 2017: Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P. MOLECULAR CELL 68(3), p. 515 - +, doi: 10.1016/j.molcel.2017.10.014
• Srb, P; Novacek, J; Kaderavek, P; Rabatinova, A; Krasny, L; Zidkova, J; Bobalova, J; Sklenar, V; Zidek, L, 2017: Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins. JOURNAL OF BIOMOLECULAR NMR 69(3), p. 133 - 146, doi: 10.1007/s10858-017-0138-1
• Kacirova, M; Novacek, J; Man, P; Obsilova, V; Obsil, T, 2017: Structural Basis for the 14-3-3 Protein-Dependent Inhibition of Phosducin Function. BIOPHYSICAL JOURNAL 112(7), p. 1339 - 1349, doi: 10.1016/j.bpj.2017.02.036
• Jansen, S; Melkova, K; Trosanova, Z; Hanakova, K; Zachrdla, M; Novacek, J; Zupa, E; Zdrahal, Z; Hritz, J; Zidek, L, 2017: Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3 zeta-binding sites reveals key differences between MAP2c and its homolog Tau. JOURNAL OF BIOLOGICAL CHEMISTRY 292(16), p. 6715 - 6727, doi: 10.1074/jbc.M116.771097
• Jasnovidova, O; Klumpler, T; Kubicek, K; Kalynych, S; Plevka, P; Stefl, R, 2017: Structure and dynamics of the RNAPII CTDsome with Rtt103. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 114(42), p. 11133 - 11138, doi: 10.1073/pnas.1712450114
• Pekarik, V; Peskova, M; Guran, R; Novacek, J; Heger, Z; Tripsianes, K; Kumar, J; Adam, V, 2017: Visualization of stable ferritin complexes with palladium, rhodium and iridium nanoparticles detected by their catalytic activity in native polyacrylamide gels. DALTON TRANSACTIONS 46(40), p. 13690 - 13694, doi: 10.1039/c7dt02818k
• Lousa, P; Nedozralova, H; Zupa, E; Novacek, J; Hritz, J, 2017: Phosphorylation of the regulatory domain of human tyrosine hydroxylase 1 monitored using non-uniformly sampled NMR. BIOPHYSICAL CHEMISTRY 223, p. 25 - 29, doi: 10.1016/j.bpc.2017.01.003
• Cerna, H; Cerny, M; Habanova, H; Safarova, D; Abushamsiya, K; Navratil, M; Brzobohaty, B, 2017: Proteomics offers insight to the mechanism behind Pisum sativum L. response to pea seed-borne mosaic virus (PSbMV). JOURNAL OF PROTEOMICS 153, p. 78 - 88, doi: 10.1016/j.jprot.2016.05.018
• Necasova, I; Janouskova, E; Klumpler, T; Hofr, C, 2017: Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it (gkx812) (vol 45, pg 12170, 2017). NUCLEIC ACIDS RESEARCH 45(21), p. 12599 - 12599, doi: 10.1093/nar/gkx968
• Necasova, I; Janouskova, E; Klumpler, T; Hofr, C, 2017: Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it. NUCLEIC ACIDS RESEARCH 45(21), p. 12170 - 12180, doi: 10.1093/nar/gkx812

2016

• Perczel, A; Atanasov, AG; Sklenar, V; Novacek, J; Papouskova, V; Kaderavek, P; Zidek, L; Kozlowski, H; Watly, J; Hecel, A; Kolkowska, P; Koca, J; Svobodova-Varekova, R; Pravda, L; Sehnal, D; Horsky, V; Geidl, S; Enriz, RD; Matejka, P; Jenistova, A; Dendisova, M; Kokaislova, A; Weissig, V; Olsen, M; Coffey, A; Ajuebor, J; Keary, R; Sanz-Gaitero, M; Raaij, MJ; McAuliffe, O; Waltenberger, B; Mocan, A; Smejkal, K; Heis, EH; Diederich, M; Musiol, R; Kosmrlj, J; Polanski, J; Jampilek, J, 2016: The Eighth Central European Conference ´´Chemistry towards Biology´´: Snapshot. MOLECULES 21(10), doi: 10.3390/molecules21101381
• Krejcikova, M; Gkionis, K; Hemzal, D; Platts, JA; Papadia, P; Margiotta, N; Sponer, J; Kubicek, K, 2016: Combining NMR (Nuclear Magnetic Resonance) and Raman spectroscopy reveals structural and functional features of a new cisplatin derivative. FEBS JOURNAL 283, p. 164 - 164
• Jasnovidova, O; Krejcikova, M; Kubicek, K; Stefl, R, 2016: Recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by 3 ´-end processing apparatus. FEBS JOURNAL 283, p. 208 - 209
• Mullapudi, E; Novacek, J; Palkova, L; Kulich, P; Lindberg, AM; van Kuppeveld, FJM; Plevka, P, 2016: Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3. JOURNAL OF VIROLOGY 90(17), p. 7628 - 7639, doi: 10.1128/JVI.00746-16
• Kubicek, K; Krejcikova, M; Brazda, P; Smirakova, E; Novacek, J; Cramer, P; Stefl, R, 2016: What are the key aspects of interaction between RNA polymerase II C-terminal domain phosphorylated on tyrosine-1 and the elongation factors. FEBS JOURNAL 283, p. 21 - 21
• Sedlacek, V; Klumpler, T; Marek, J; Kucera, I, 2016: Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans. MICROBIOLOGICAL RESEARCH 188, p. 9 - 22, doi: 10.1016/j.micres.2016.04.006
• Mullapudi E; Nováček J; Pálková L; Kulich P; Lindberg AM; van Kuppeveld FJ; Plevka P, 2016: Structure and genome release mechanism of human cardiovirus Saffold virus-3. JOURNAL OF VIROLOGY , p. [Epub ahead of print] -
• Nováček J; Šiborová M; Benešík M; Pantůček R; Doškař J; Plevka P, 2016: Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 113(33), p. 9351 - 6, doi: 10.1073/pnas.1605883113
• Graf M; Arenz S; Huter P; Dönhöfer A; Nováček J; Wilson DN, 2016: Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions. NUCLEIC ACIDS RESEARCH , p. [Epub ahead of print] - , doi: 10.1093/nar/gkw1272

2015

• Hrossova, D; Sikorsky, T; Potesil, D; Bartosovic, M; Pasulka, J; Zdrahal, Z; Stefl, R; Vanacova, S, 2015: RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3´-end extended forms of snRNAs. NUCLEIC ACIDS RESEARCH 43(8), p. 4236 - 4248
• Andreas, LB; Stanek, J; Le Marchand, T; Bertarello, A; Paepe, DCD; Lalli, D; Krejcikova, M; Doyen, C; Oster, C; Knott, B; Wegner, S; Engelke, F; Felli, IC; Pierattelli, R; Dixon, NE; Emsley, L; Herrmann, T; Pintacuda, G, 2015: Protein residue linking in a single spectrum for magic-angle spinning NMR assignment. JOURNAL OF BIOMOLECULAR NMR 62(3), p. 253 - 261, doi: 10.1007/s10858-015-9956-1
• Krepl, M; Havrila, M; Stadlbauer, P; Banas, P; Otyepka, M; Pasulka, J; Stefl, R; Sponer, J, 2015: Can We Execute Stable Microsecond-Scale Atomistic Simulations of Protein-RNA Complexes?. JOURNAL OF CHEMICAL THEORY AND COMPUTATION 11(3), p. 1220 - 1243, doi: 10.1021/ct5008108
• Hrossova, D; Sikorsky, T; Potesil, D; Bartosovic, M; Pasulka, J; Zdrahal, Z; Stefl, R; Vanacova, S, 2015: RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3 ´-end extended forms of snRNAs. NUCLEIC ACIDS RESEARCH 43(8), p. 4236 - 4248, doi: 10.1093/nar/gkv240
• MacRaild, CA; Zachrdla, M; Andrew, D; Krishnarjuna, B; Novacek, J; Zidek, L; Sklenar, V; Richards, JS; Beeson, JG; Anders, RF; Norton, RS, 2015: Conformational Dynamics and Antigenicity in the Disordered Malaria Antigen Merozoite Surface Protein 2. PLOS ONE 10(3), doi: 10.1371/journal.pone.0119899
• Kuban, V; Novacek, J; Bumba, L; Zidek, L, 2015: NMR assignment of intrinsically disordered self-processing module of the FrpC protein of Neisseria meningitidis. BIOMOLECULAR NMR ASSIGNMENTS 9(2), p. 435 - 440, doi: 10.1007/s12104-015-9625-z
• Klenovsky, P; Hemzal, D; Steindl, P; Zikova, M; Krapek, V; Humlicek, J, 2015: Polarization anisotropy of the emission from type-II quantum dots. PHYSICAL REVIEW B 92(24), doi: 10.1103/PhysRevB.92.241302
• Kacirova, M; Novacek, J; Man, P; Kadek, A; Obsilova, V; Obsil, T, 2015: Biophysical characterization of phosducin and its complex with the 14-3-3 protein. PROTEIN SCIENCE 24, p. 124 - 124
• Zebret, S; Vogele, E; Klumpler, T; Hamacek, J, 2015: Designing Artificial 3D Helicates: Unprecedented Self-Assembly of Homo-octanuclear Tetrapods with Europium. CHEMISTRY-A EUROPEAN JOURNAL 21(18), p. 6695 - 6699, doi: 10.1002/chem.201500006

2014

• Prochazka, P; Mach, J; Bischoff, D; Liskova, Z; Dvorak, P; Vanatka, M; Simonet, P; Varlet, A; Hemzal, D; Petrenec, M; Kalina, L; Bartosik, M; Ensslin, K; Varga, P; Cechal, J; Sikola, T, 2014: Ultrasmooth metallic foils for growth of high quality graphene by chemical vapor deposition. NANOTECHNOLOGY 25(18), doi: 10.1088/0957-4484/25/18/185601
• Humlicek, J; Hemzal, D; Dubroka, A; Caha, O; Steiner, H; Bauer, G; Springholz, G, 2014: Raman and interband optical spectra of epitaxial layers of the topological insulators Bi2Te3 and Bi2Se3 on BaF2 substrates. PHYSICA SCRIPTA T162, doi: 10.1088/0031-8949/2014/T162/014007
• Sedlacek, V; Klumpler, T; Marek, J; Kucera, I, 2014: The Structural and Functional Basis of Catalysis Mediated by NAD(P)H:acceptor Oxidoreductase (FerB) of Paracoccus denitrificans. PLOS ONE 9(5), doi: 10.1371/journal.pone.0096262
• Tudek, A; Porrua, O; Kabzinski, T; Lidschreiber, M; Kubicek, K; Fortova, A; Lacroute, F; Vanacova, S; Cramer, P; Stefl, R; Libri, D, 2014: Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation. MOLECULAR CELL 55(3), p. 467 - 481, doi: 10.1016/j.molcel.2014.05.031
• Bacikova, V; Pasulka, J; Kubicek, K; Stefl, R, 2014: Structure and semi-sequence-specific RNA binding of Nrd1. NUCLEIC ACIDS RESEARCH 42(12), p. 8024 - 8038, doi: 10.1093/nar/gku446

2013

• Labuta, J; Ishihara, S; Sikorsky, T; Futera, Z; Shundo, A; Hanykova, L; Burda, JV; Ariga, K; Hill, JP, 2013: NMR spectroscopic detection of chirality and enantiopurity in referenced systems without formation of diastereomers. NATURE COMMUNICATIONS 4, doi: 10.1038/ncomms3188
• Heyl, A; Brault, M; Frugier, F; Kuderova, A; Lindner, AC; Motyka, V; Rashotte, AM; von Schwartzenberg, K; Vankova, R; Schaller, GE, 2013: Nomenclature for Members of the Two-Component Signaling Pathway of Plants. PLANT PHYSIOLOGY 161(3), p. 1063 - 1065, doi: 10.1104/pp.112.213207
• Jasnovidova, O; Stefl, R, 2013: The CTD code of RNA polymerase II: a structural view. WILEY INTERDISCIPLINARY REVIEWS-RNA 4(1), p. 1 - 16, doi: 10.1002/wrna.1138
• Valencia, RG; Walko, G; Janda, L; Novacek, J; Mihailovska, E; Reipert, S; Andra-Marobela, K; Wiche, G, 2013: Intermediate filament-associated cytolinker plectin 1c destabilizes microtubules in keratinocytes. MOLECULAR BIOLOGY OF THE CELL 24(6), p. 768 - 784, doi: 10.1091/mbc.E12-06-0488

2012

• Suchankova, T; Kubicek, K; Kasparkova, J; Brabec, V; Kozelka, J, 2012: Platinum-DNA interstrand crosslinks: Molecular determinants of bending and unwinding of the double helix. JOURNAL OF INORGANIC BIOCHEMISTRY 108, p. 69 - 79, doi: 10.1016/j.jinorgbio.2011.09.025
• Holub, P; Lalakova, J; Cerna, H; Pasulka, J; Sarazova, M; Hrazdilova, K; Arce, MS; Hobor, F; Stefl, R; Vanacova, S, 2012: Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation. NUCLEIC ACIDS RESEARCH 40(12), p. 5679 - 5693, doi: 10.1093/nar/gks223
• Ishihara, S; Labuta, J; Sikorsky, T; Burda, JV; Okamoto, N; Abe, H; Ariga, K; Hill, JP, 2012: Colorimetric detection of trace water in tetrahydrofuran using N,N ´-substituted oxoporphyrinogens. CHEMICAL COMMUNICATIONS 48(33), p. 3933 - 3935, doi: 10.1039/c2cc31118f
• Novacek, J; Haba, NY; Chill, JH; Zidek, L; Sklenar, V, 2012: 4D Non-uniformly sampled HCBCACON and (1) J(NC alpha)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins. JOURNAL OF BIOMOLECULAR NMR 53(2), p. 139 - 148, doi: 10.1007/s10858-012-9631-8
• Porrua, O; Hobor, F; Boulay, J; Kubicek, K; D´Aubenton-Carafa, Y; Gudipati, RK; Stefl, R; Libri, D, 2012: In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination. EMBO JOURNAL 31(19), p. 3935 - 3948, doi: 10.1038/emboj.2012.237
• Sikorsky, T; Hobor, F; Krizanova, E; Pasulka, J; Kubicek, K; Stefl, R, 2012: Recognition of asymmetrically dimethylated arginine by TDRD3. NUCLEIC ACIDS RESEARCH 40(22), p. 11748 - 11755, doi: 10.1093/nar/gks929
• Jung, YW; Byun, JS; Kim, YD; Hemzal, D; Humlicek, J, 2012: Study of the Interaction Between HSA and Oligo-DNA Using Total Internal Reflection Ellipsometry. JOURNAL OF THE KOREAN PHYSICAL SOCIETY 60(8), p. 1288 - 1291, doi: 10.3938/jkps.60.1288
• ZELINA, P.;O. JASEK;V. KUDRLE;B. DAVID;N. PIZUROVA;D. PAVLINAK;Z. VORAC;D. HEMZAL., 2012: Versatile low-pressure plasma-enhanced process for synthesis of iron and iron-based magnetic nanopowders. WORLD JOURNAL OF ENGINEERING 9, p. 161 - 166
• Kubicek, K; Cerna, H; Holub, P; Pasulka, J; Hrossova, D; Loehr, F; Hofr, C; Vanacova, S; Stefl, R, 2012: Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. GENES & DEVELOPMENT 26(17), p. 1891 - 1896, doi: 10.1101/gad.192781.112

2011

• Kubicek, K; Pasulka, J; Cerna, H; Lohr, F; Stefl, R, 2011: H-1, C-13, and N-15 resonance assignments for the CTD-interacting domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA polymerase II. BIOMOLECULAR NMR ASSIGNMENTS 5(2), p. 203 - 205, doi: 10.1007/s12104-011-9300-y
• Hobor, F; Pergoli, R; Kubicek, K; Hrossova, D; Bacikova, V; Zimmermann, M; Pasulka, J; Hofr, C; Vanacova, S; Stefl, R, 2011: Recognition of Transcription Termination Signal by the Nuclear Polyadenylated RNA-binding (NAB) 3 Protein. JOURNAL OF BIOLOGICAL CHEMISTRY 286(5), p. 3645 - 3657, doi: 10.1074/jbc.M110.158774
• Sanudo, M; Jacko, M; Rammelt, C; Vanacova, S; Stefl, R, 2011: H-1, C-13, and N-15 chemical shift assignments of ZCCHC9. BIOMOLECULAR NMR ASSIGNMENTS 5(1), p. 19 - 21, doi: 10.1007/s12104-010-9257-2
• Pekarova, B; Klumpler, T; Triskova, O; Horak, J; Jansen, S; Dopitova, R; Borkovcova, P; Papouskova, V; Nejedla, E; Sklenar, V; Marek, J; Zidek, L; Hejatko, J; Janda, L, 2011: Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana. PLANT JOURNAL 67(5), p. 827 - 839, doi: 10.1111/j.1365-313X.2011.04637.x
• Reblova, K; Sponer, JE; Spackova, N; Besseova, I; Sponer, J, 2011: A-Minor Tertiary Interactions in RNA Kink-Turns. Molecular Dynamics and Quantum Chemical Analysis. JOURNAL OF PHYSICAL CHEMISTRY B 115(47), p. 13897 - 13910, doi: 10.1021/jp2065584

2010

• Richard Stefl, Florian C. Oberstrass, Jennifer L. Hood, Muriel Jourdan, Michal Zimmermann, Lenka Skrisovska, Christophe Maris, Li Peng, Ctirad Hofr, Ronald B. Emeson, Frédéric H.-T. Allaine, 2010: The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific read out of the minor groove. CELL 143(2), p. 225 - 237, doi: 10.1016/j.cell.2010.09.026
• Kubicek, K; Grimm, SK; Orts, J; Sasse, F; Carlomagno, T, 2010: The Tubulin-Bound Structure of the Antimitotic Drug Tubulysin. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 49(28), p. 4809 - 4812, doi: 10.1002/anie.200906828
• Kubicek, K; Monnet, J; Scintilla, S; Kopecna, J; Arnesano, F; Trantirek, L; Chopard, C; Natile, G; Kozelka, J, 2010: Unusual Interstrand Pt(S,S-diaminocyclohexane)-GG Crosslink Formed by Rearrangement of a Classical Intrastrand Crosslink Within a DNA Duplex. CHEMISTRY-AN ASIAN JOURNAL 5(2), p. 244 - 247, doi: 10.1002/asia.200900655
• Pergoli, R; Kubicek, K; Hobor, F; Pasulka, J; Stefl, R, 2010: H-1, C-13, and N-15 chemical shift assignments for the RNA recognition motif of Nab3. BIOMOLECULAR NMR ASSIGNMENTS 4(1), p. 119 - 121, doi: 10.1007/s12104-010-9221-1